STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0040PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpo:Mpop_4845 endonuclease/exonuclease/phosphatase. (329 aa)    
Predicted Functional Partners:
Xcel_1361
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.805
Xcel_3118
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: scl:sce1210 hypothetical protein.
    
   0.805
Xcel_0041
KEGG: mno:Mnod_3709 hypothetical protein.
 
     0.749
Xcel_2949
TIGRFAM: trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
    0.640
Xcel_0039
PFAM: aminotransferase class I and II; KEGG: scl:sce5648 aspartate transaminase.
       0.590
Xcel_0704
PFAM: OmpA/MotB domain protein; KEGG: oan:Oant_0490 OmpA/MotB domain protein.
   
  
 0.589
Xcel_0042
Hypothetical protein.
       0.565
Xcel_3244
KEGG: ank:AnaeK_2924 hypothetical protein.
 
     0.500
Xcel_1078
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ABC transporter substrate binding protein (proline/glycine/betaine).
  
    0.459
Xcel_0043
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:RL2799 LysR family transcriptional regulator.
     
 0.452
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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