STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0047Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ppw:PputW619_2158 LuxR family transcriptional regulator. (80 aa)    
Predicted Functional Partners:
Xcel_0048
PFAM: NUDIX hydrolase; KEGG: bba:Bd2220 MutT/NUDIX family hydrolase/pyrophosphatase; Belongs to the Nudix hydrolase family.
       0.557
Xcel_0191
PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce2236 putative two-component system sensor kinase.
  
 
 0.481
Xcel_0077
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; regulatory protein LuxR; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; response regulator receiver; ATP-binding region ATPase domain protein; regulatory protein LuxR; KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase.
 
 
 0.477
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.445
Xcel_0709
Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: sus:Acid_1604 integral membrane sensor signal transduction histidine kinase.
  
 
 0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.