STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0059PFAM: amino acid permease-associated region; KEGG: pde:Pden_4334 amino acid permease-associated region. (493 aa)    
Predicted Functional Partners:
Xcel_0057
KEGG: aeh:Mlg_2715 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
   0.523
Xcel_0058
PFAM: ABC-2 type transporter; KEGG: bcr:BCAH187_A3467 ABC transporter, efflux permease protein.
       0.475
Xcel_1980
PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xcb:XC_0579 dicarboxylate carrier protein.
 
 
 
 0.466
Xcel_3068
PFAM: amino acid permease-associated region; KEGG: msl:Msil_2831 amino acid permease-associated region.
  
     0.462
Xcel_0322
PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_0869 major facilitator transporter.
  
     0.434
Xcel_2380
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bmj:BMULJ_02528 DME family drug/metabolite transporter.
  
 
 0.414
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.