STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0060PFAM: PspC domain protein; KEGG: hne:HNE_3296 phage shock protein C. (108 aa)    
Predicted Functional Partners:
Xcel_2934
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: scl:sce5472 chloroplast membrane-associated 30 kD protein.
  
 
 0.906
Xcel_3225
PFAM: membrane protein of unknown function; KEGG: gbm:Gbem_2195 membrane protein of unknown function.
  
    0.701
Xcel_0708
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: swi:Swit_2762 hypothetical protein.
     
 0.632
Xcel_0077
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; regulatory protein LuxR; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; response regulator receiver; ATP-binding region ATPase domain protein; regulatory protein LuxR; KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase.
  
  
 0.533
Xcel_0459
2-alkenal reductase; KEGG: afw:Anae109_2046 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
  
  
 0.516
Xcel_0213
KEGG: sus:Acid_1228 hypothetical protein.
  
  
 0.507
Xcel_0061
KEGG: bsu:BSU10840 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
       0.504
Xcel_2716
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.
 
    0.439
Xcel_3273
KEGG: gox:GOX1145 transcriptional regulator.
 
     0.428
Xcel_0709
Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: sus:Acid_1604 integral membrane sensor signal transduction histidine kinase.
 
    0.423
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.