STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0061KEGG: bsu:BSU10840 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (341 aa)    
Predicted Functional Partners:
Xcel_1503
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
    
 
 0.708
Xcel_0063
PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr2244 sugar binding protein of sugar ABC transporter.
 
     0.662
Xcel_0064
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
     0.612
Xcel_0062
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: alpha-glucosidase; K01187 alpha-glucosidase.
  
    0.584
Xcel_0065
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1924 sugar ABC transporter, permease protein.
 
     0.579
Xcel_0060
PFAM: PspC domain protein; KEGG: hne:HNE_3296 phage shock protein C.
       0.504
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.