STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0084PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; PT repeat-containing protein; KEGG: similar to microtubule-associated protein 6. (722 aa)    
Predicted Functional Partners:
Xcel_1087
KEGG: hha:Hhal_1735 putative ABC transporter.
  
     0.595
Xcel_1535
Hypothetical protein.
  
     0.498
Xcel_1537
Hypothetical protein.
  
     0.496
Xcel_2251
KEGG: hypothetical protein.
  
     0.481
Xcel_0173
PFAM: protein of unknown function DUF742.
  
     0.477
Xcel_1406
Hypothetical protein.
  
     0.455
Xcel_1086
Hypothetical protein; KEGG: hha:Hhal_1736 putative ABC transporter.
  
     0.441
Xcel_0082
KEGG: hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
       0.430
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.430
Xcel_1403
PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase.
  
     0.428
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.