STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0100TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C1161 polar amino acid ABC transporter inner membrane protein. (318 aa)    
Predicted Functional Partners:
Xcel_0101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80063 putative ATP-binding component of ABC transporter.
 0.999
Xcel_1247
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pla:Plav_2987 ABC transporter related.
 
 0.991
Xcel_1128
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU03590 hypothetical protein.
 
 0.990
Xcel_1126
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bch:Bcen2424_3140 extracellular solute- binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.963
Xcel_0087
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_C1316 polar amino acid ABC transporter periplasmic ligand-binding protein.
 
 0.942
Xcel_0104
PFAM: Extracellular ligand-binding receptor; KEGG: csa:Csal_1418 extracellular ligand-binding receptor.
   
 0.923
Xcel_0088
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_C1316 polar amino acid ABC transporter periplasmic ligand-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.896
Xcel_2803
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C6690 ABC transporter, ATPase subunit.
 
 
    0.809
Xcel_2510
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2159 macrolide ABC efflux protein.
 
 
    0.795
Xcel_3176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1688 lipoprotein-releasing system ATP- binding protein.
 
 
    0.760
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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