STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0102PFAM: Excalibur domain protein; KEGG: xau:Xaut_0293 translation initiation factor IF-2. (318 aa)    
Predicted Functional Partners:
Xcel_1986
KEGG: bba:Bd1307 hypothetical protein.
  
     0.686
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.639
Xcel_1987
Hypothetical protein.
  
     0.636
Xcel_1103
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
    0.617
Xcel_1249
Hypothetical protein.
  
     0.590
Xcel_2854
Capsular exopolysaccharide family; KEGG: pca:Pcar_1464 uncharacterized exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
    
 
 0.530
Xcel_2887
Capsular exopolysaccharide family; KEGG: pca:Pcar_1539 uncharacterized exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
    
 
 0.530
Xcel_0227
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
  
     0.484
Xcel_3367
KEGG: similar to MGC139263 protein.
  
     0.481
Xcel_0301
PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: rec:RHECIAT_PC0000074 putative NTP pyrophosphohydrolase protein; Belongs to the Nudix hydrolase family.
  
     0.478
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.