STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0104PFAM: Extracellular ligand-binding receptor; KEGG: csa:Csal_1418 extracellular ligand-binding receptor. (422 aa)    
Predicted Functional Partners:
Xcel_0107
PFAM: inner-membrane translocator; KEGG: rru:Rru_A3415 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.981
Xcel_0108
PFAM: inner-membrane translocator; KEGG: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.956
Xcel_0106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsh:Dshi_1981 ABC transporter related.
 
  
 0.953
Xcel_0100
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C1161 polar amino acid ABC transporter inner membrane protein.
   
 0.923
Xcel_0105
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sit:TM1040_1274 ABC transporter related.
 
  
 0.923
Xcel_0101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80063 putative ATP-binding component of ABC transporter.
   
 
 0.911
Xcel_1506
PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gur:Gura_1146 response regulator receiver/ANTAR domain-containing protein.
  
 
 0.854
Xcel_1401
Putative PAS/PAC sensor protein; PFAM: ANTAR domain protein; PAS fold-3 domain protein; KEGG: met:M446_3030 multi-sensor hybrid histidine kinase.
  
 
 0.833
Xcel_1403
PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase.
  
 
 0.776
Xcel_1503
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.765
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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