STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0139Hypothetical protein; KEGG: similar to formin, inverted. (236 aa)    
Predicted Functional Partners:
Xcel_0140
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1852 hypothetical protein.
       0.556
Xcel_3302
Hypothetical protein; KEGG: bpm:BURPS1710b_A1613 rhs element Vgr protein.
  
    0.537
Xcel_0137
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpo:Mpop_3746 multi-sensor signal transduction histidine kinase.
       0.523
Xcel_0138
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; KEGG: azo:azo2970 two-component response regulator.
  
    0.523
Xcel_3194
KEGG: aba:Acid345_2164 hypothetical protein.
  
    0.477
Xcel_2523
KEGG: afw:Anae109_4393 membrane protein.
  
     0.416
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.