STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0144PFAM: regulatory protein TetR; KEGG: pde:Pden_4630 transcriptional regulator, TetR family. (233 aa)    
Predicted Functional Partners:
Xcel_0146
KEGG: bha:BH1004 hypothetical protein.
 
  
 0.905
Xcel_0145
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein.
 
   
 0.829
Xcel_0143
Hypothetical protein.
       0.701
Xcel_0141
PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: cbs:COXBURSA331_A0988 amino acid permease family protein.
 
     0.471
Xcel_0142
PFAM: sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: yen:YE0973 putative membrane transport protein.
       0.463
Xcel_0980
PFAM: O-methyltransferase family 3; Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: aeh:Mlg_0966 caffeoyl-CoA O-methyltransferase.
     
 0.411
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.