STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0145PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter ATP-binding protein. (340 aa)    
Predicted Functional Partners:
Xcel_0146
KEGG: bha:BH1004 hypothetical protein.
  
 0.960
Xcel_3136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2715 daunorubicin resistance ABC transporter ATPase subunit.
 
    
0.912
Xcel_0752
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein.
 
     
0.898
Xcel_0144
PFAM: regulatory protein TetR; KEGG: pde:Pden_4630 transcriptional regulator, TetR family.
 
   
 0.829
Xcel_0143
Hypothetical protein.
       0.701
Xcel_0418
PFAM: ABC-2 type transporter; KEGG: bcb:BCB4264_A2507 putative ABC transporter, permease protein.
  
 0.689
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.661
Xcel_0141
PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: cbs:COXBURSA331_A0988 amino acid permease family protein.
 
   0.503
Xcel_0142
PFAM: sulphate transporter; Xanthine/uracil/vitamin C permease; KEGG: yen:YE0973 putative membrane transport protein.
  
    0.471
Xcel_3132
PFAM: ABC-2 type transporter; KEGG: bcz:BCZK3149 ABC transporter efflux permease; daunorubicin resistance transmembrane protein.
  
 0.448
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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