STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0163PFAM: major facilitator superfamily MFS_1; KEGG: smt:Smal_0426 major facilitator superfamily MFS_1. (454 aa)    
Predicted Functional Partners:
Xcel_0164
KEGG: mpt:Mpe_A2206 hypothetical protein.
 
     0.615
Xcel_0162
KEGG: afw:Anae109_0595 carbohydrate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
       0.563
Xcel_3265
PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase.
  
     0.555
Xcel_2022
Hypothetical protein.
  
     0.467
Xcel_0165
Acetyltransferase-like protein; KEGG: psa:PST_4142 predicted acetyltransferase.
       0.446
Xcel_0166
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dno:DNO_1026 fumarate reductase flavoprotein subunit.
       0.446
Xcel_0167
KEGG: hip:CGSHiEE_07890 fumarate reductase iron- sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.446
Xcel_2713
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.
  
     0.410
Xcel_0568
PFAM: C-5 cytosine-specific DNA methylase; KEGG: hch:HCH_02855 site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
     0.401
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.