STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0176Hypothetical protein. (158 aa)    
Predicted Functional Partners:
Xcel_1614
Hypothetical protein.
  
     0.757
Xcel_1108
PFAM: Luciferase-like monooxygenase; KEGG: pzu:PHZ_c2545 5,10- methylenetetrahydromethanopterin reductase.
  
     0.673
Xcel_1324
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: mrd:Mrad2831_5869 alkanesulfonate monooxygenase.
  
     0.610
Xcel_0376
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; Luciferase-like monooxygenase; KEGG: pol:Bpro_1407 FAD linked oxidase-like.
 
   
 0.580
Xcel_1969
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: aha:AHA_1691 NADH dehydrogenase.
  
 0.555
Xcel_3345
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.555
Xcel_0669
PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like.
  
     0.504
Xcel_2999
PFAM: Luciferase-like monooxygenase; KEGG: rpi:Rpic_0157 luciferase-like monooxygenase.
  
     0.424
Xcel_0744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpt:Bpet3362 HlyB/MsbA family ABC transporter.
 
     0.410
Xcel_3343
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: tbd:Tbd_2736 ArsR family transcriptional regulator.
 
   
 0.406
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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