STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0196PFAM: Bile acid:sodium symporter; KEGG: psa:PST_0574 sodium:bile acid symporter family protein. (323 aa)    
Predicted Functional Partners:
Xcel_0197
Hypothetical protein.
       0.580
Xcel_3344
Transcriptional regulator, MarR family; PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; regulatory protein MarR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; KEGG: rsp:RSP_4210 ArsR family transcriptional regulator.
  
  
 0.560
Xcel_0034
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: ppf:Pput_3811 protein tyrosine phosphatase.
  
  
 0.520
Xcel_2909
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bxe:Bxe_B2256 putative protein tyrosine phosphatase.
  
  
 0.520
Xcel_0194
PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA1928 ribosomal protein alanine acetyltransferase.
       0.472
Xcel_0195
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_0677 phospholipid/glycerol acyltransferase.
       0.472
Xcel_0193
Hypothetical protein.
       0.413
Xcel_3092
Hypothetical protein.
  
    0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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