STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0205Hypothetical protein. (263 aa)    
Predicted Functional Partners:
Xcel_0206
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: Muc19; mucin 19; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.842
Xcel_0173
PFAM: protein of unknown function DUF742.
  
     0.659
Xcel_0615
Hypothetical protein.
  
     0.647
Xcel_3302
Hypothetical protein; KEGG: bpm:BURPS1710b_A1613 rhs element Vgr protein.
  
     0.591
Xcel_0617
PFAM: Tetratricopeptide TPR_4; KEGG: scl:sce6745 hypothetical protein.
  
     0.557
Xcel_0171
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.547
Xcel_0614
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: met:M446_5053 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.504
Xcel_0172
PFAM: Roadblock/LC7 family protein; KEGG: afr:AFE_2578 roadblock/LC7 domain protein.
  
     0.501
Xcel_1986
KEGG: bba:Bd1307 hypothetical protein.
  
     0.500
Xcel_1987
Hypothetical protein.
  
     0.497
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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