Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xcel_0232Endo-1,3(4)-beta-glucanase; PFAM: glycoside hydrolase family 81; KEGG: scl:sce7103 hypothetical protein. (729 aa)    
Predicted Functional Partners:
Xcel_0230
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; KEGG: bph:Bphy_2377 cellulose synthase (UDP- forming).
 
    0.953
Xcel_0231
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bpt:Bpet1203 HlyD family secretion protein.
       0.800
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
   0.512
Xcel_0233
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; Benzoate membrane transport protein; KEGG: uracil-xanthine permease.
       0.463
Xcel_0229
Hypothetical protein.
       0.447
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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