STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0247PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_2963 TRAP dicarboxylate transporter, DctP subunit. (506 aa)    
Predicted Functional Partners:
Xcel_0246
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1484 TRAP dicarboxylate transporter, DctP subunit.
 
    
0.643
Xcel_0245
Hypothetical protein; KEGG: bam:Bamb_4945 periplasmic sensor signal transduction histidine kinase.
 
     0.450
Xcel_0906
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: eba:ebA4048 IclR family transciptional regulator.
 
     0.407
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.