STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0251PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcu:BCAH820_0344 ABC transporter, permease protein. (220 aa)    
Predicted Functional Partners:
Xcel_0249
PFAM: NLPA lipoprotein; KEGG: bcb:BCB4264_A0360 putative ABC transporter, substrate-binding protein.
 0.999
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.999
Xcel_0732
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 0.996
Xcel_0729
PFAM: NLPA lipoprotein; KEGG: bid:Bind_2455 NlpA lipoprotein.
 
 0.995
Xcel_0733
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpi:Rpic_0791 binding-protein-dependent transport systems inner membrane component.
  
  
 
0.921
Xcel_0252
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.628
Xcel_0253
TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_4100 death-on-curing family protein.
       0.628
Xcel_0051
PFAM: methylenetetrahydrofolate reductase; KEGG: acp:A2cp1_2862 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
   
    0.475
Xcel_0254
KEGG: ade:Adeh_3637 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
       0.455
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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