STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0256PFAM: ROK family protein; KEGG: mxa:MXAN_6549 transcriptional regulator, ROK family. (393 aa)    
Predicted Functional Partners:
Xcel_0255
PFAM: beta-lactamase; KEGG: bbt:BBta_6049 putative beta-lactamase.
       0.572
Xcel_0257
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein.
      0.509
Xcel_1099
PFAM: phosphotransferase system PTS EIIB protein; KEGG: bmj:BMULJ_02774 PTS system N- acetylglucosamine-specific IIB component.
  
 
 0.500
Xcel_2049
PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein.
  
   
 0.472
Xcel_0751
KEGG: mxa:MXAN_6549 transcriptional regulator, ROK family.
  
     0.468
Xcel_0258
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bha:BH3440 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
       0.453
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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