STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0269PFAM: N-acylglucosamine 2-epimerase; KEGG: ppf:Pput_1052 N-acylglucosamine 2-epimerase. (417 aa)    
Predicted Functional Partners:
Xcel_0270
Fructokinase; PFAM: PfkB domain protein; KEGG: sme:SMc02164 fructokinase protein; Belongs to the carbohydrate kinase PfkB family.
    
 0.891
orn
Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
      0.891
Xcel_0268
PFAM: glycoside hydrolase family 2 TIM barrel; KEGG: similar to mannosidase, beta A, lysosomal.
       0.781
Xcel_0267
PFAM: ROK family protein; KEGG: mxa:MXAN_6549 transcriptional regulator, ROK family.
       0.777
Xcel_0263
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
       0.773
Xcel_0264
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
       0.773
Xcel_0265
KEGG: oan:Oant_4612 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.773
Xcel_0266
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bbt:BBta_4864 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.773
Xcel_3237
PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_2855 extracellular solute-binding protein, family 1.
     0.548
Xcel_0262
PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce4302 ABC-type dipeptide transport system, periplasmic component.
       0.538
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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