STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0275KEGG: scl:sce7370 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Xcel_0276
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein.
 
 
 0.969
Xcel_0492
Hypothetical protein.
  
     0.577
Xcel_0484
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: ade:Adeh_3063 VCBS.
  
     0.559
Xcel_3091
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; nucleic acid binding OB-fold tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: rpb:RPB_0803 5'-nucleotidase.
  
    0.550
Xcel_0427
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sse:Ssed_4139 putative outer membrane adhesin like proteiin.
  
     0.538
Xcel_0486
PFAM: protein of unknown function DUF58; KEGG: sus:Acid_7892 hypothetical protein.
 
     0.512
Xcel_0274
PFAM: Excalibur domain protein; nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: SNF2 superfamily protein.
       0.510
Xcel_1133
PFAM: protein of unknown function DUF541; KEGG: hypothetical protein.
  
     0.507
Xcel_0277
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: acr:Acry_1166 triple helix repeat-containing collagen.
       0.473
Xcel_0057
KEGG: aeh:Mlg_2715 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.446
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.