STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0279Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor domain protein; regulatory protein TetR; KEGG: scl:sce6697 putative transcriptional regulator. (268 aa)    
Predicted Functional Partners:
Xcel_1152
Putative PAS/PAC sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: scl:sce1424 HTH-type transcriptional repressor PurR.
  
  
 0.551
Xcel_0280
PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0988 hypothetical protein.
       0.492
Xcel_2792
PFAM: regulatory protein TetR; KEGG: acp:A2cp1_2482 transcriptional regulator, TetR family.
  
     0.457
Xcel_2403
PFAM: protein of unknown function UPF0089; KEGG: mxa:MXAN_1127 hypothetical protein.
  
     0.427
Xcel_3129
Hypothetical protein; KEGG: GG18790 gene product from transcript GG18790- RA.
  
     0.425
Xcel_3070
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: pmr:PMI3082 TetR-family transcriptional regulator.
  
     0.422
Xcel_1899
IMP dehydrogenase family protein; KEGG: afw:Anae109_3133 inositol-5-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein.
 
 
   0.421
Xcel_1240
PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: ade:Adeh_2092 DEAD/DEAH box helicase-like.
  
     0.420
Xcel_3338
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; protein of unknown function UPF0074; KEGG: scl:sce5223 DeoR family transcriptional regulator.
  
     0.406
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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