STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0286PFAM: HesB/YadR/YfhF-family protein; KEGG: rpb:RPB_0979 HesB/YadR/YfhF; Belongs to the HesB/IscA family. (93 aa)    
Predicted Functional Partners:
Xcel_1362
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein.
  
  
 0.746
Xcel_0686
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pna:Pnap_1448 putative transcriptional regulator, MerR family.
  
  
 0.649
Xcel_1426
Hypothetical protein.
  
     0.628
Xcel_0347
PFAM: aminotransferase class V; KEGG: gbm:Gbem_1583 aminotransferase class V.
  
  
 0.591
Xcel_2409
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS.
  
  
 0.591
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
  
     0.579
Xcel_1103
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.540
Xcel_1360
KEGG: bcr:BCAH187_A5123 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.532
Xcel_1357
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcr:BCAH187_A5119 FeS assembly protein SufB.
  
 
 0.518
Xcel_1358
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: acp:A2cp1_0895 FeS assembly protein SufD.
  
 
 0.518
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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