STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0288PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbe:GbCGDNIH1_1597 quinate/shikimate dehydrogenase. (215 aa)    
Predicted Functional Partners:
Xcel_0287
PFAM: helix-turn-helix HxlR type; KEGG: gur:Gura_3513 HxlR family transcriptional regulator.
  
  
 0.701
Xcel_0165
Acetyltransferase-like protein; KEGG: psa:PST_4142 predicted acetyltransferase.
  
    0.586
Xcel_0164
KEGG: mpt:Mpe_A2206 hypothetical protein.
   
    0.511
Xcel_1298
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.502
Xcel_1516
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dol:Dole_3066 hypothetical protein.
   
    0.499
Xcel_2052
PFAM: CsbD family protein; KEGG: hypothetical protein.
   
    0.499
Xcel_0756
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: aba:Acid345_1451 3-demethylubiquinone-9 3- methyltransferase.
   
    0.479
Xcel_1903
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
     0.477
Xcel_0289
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bur:Bcep18194_B2467 XRE family transcriptional regulator.
  
     0.464
Xcel_1797
PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_PC0000110 putative riboflavin biosynthesis protein.
 
    0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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