STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0306PFAM: acyl-CoA thioesterase; KEGG: tesB; acyl-CoA thioesterase II; K10805 acyl- CoA thioesterase II. (319 aa)    
Predicted Functional Partners:
Xcel_1097
PFAM: acyl-CoA thioesterase; KEGG: ret:RHE_CH03975 acyl-CoA thioesterase II protein.
  
  
 
0.913
Xcel_0307
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: scl:sce8661 oxidoreductase.
 
   
 0.847
Xcel_0308
Thioesterase-like protein; KEGG: sal:Sala_0686 4-hydroxybenzoyl-CoA thioesterase.
     
 0.811
Xcel_0309
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway.
       0.780
Xcel_0305
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dac:Daci_5633 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase.
  
    0.710
Xcel_0304
PFAM: Endoribonuclease L-PSP; KEGG: scl:sce2000 translation initiation inhibitor.
 
     0.638
Xcel_0303
PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: pde:Pden_5003 cupin 2, conserved barrel domain protein.
 
     0.556
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 
 0.484
pdxS
Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
  
  
 0.403
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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