STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0309Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway. (302 aa)    
Predicted Functional Partners:
Xcel_0307
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: scl:sce8661 oxidoreductase.
 
     0.929
Xcel_0304
PFAM: Endoribonuclease L-PSP; KEGG: scl:sce2000 translation initiation inhibitor.
 
     0.841
Xcel_0308
Thioesterase-like protein; KEGG: sal:Sala_0686 4-hydroxybenzoyl-CoA thioesterase.
       0.789
Xcel_0303
PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: pde:Pden_5003 cupin 2, conserved barrel domain protein.
 
     0.782
Xcel_0306
PFAM: acyl-CoA thioesterase; KEGG: tesB; acyl-CoA thioesterase II; K10805 acyl- CoA thioesterase II.
       0.780
Xcel_0305
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dac:Daci_5633 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase.
       0.710
Xcel_0315
KEGG: pol:Bpro_4735 putative indolepyruvate oxidoreductase subunit B.
 
     0.686
Xcel_0314
Indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: pol:Bpro_4734 thiamine pyrophosphate enzyme- like TPP-binding.
  
     0.621
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.569
Xcel_0313
PFAM: cyclase family protein; KEGG: plu:plu1439 hypothetical protein.
  
     0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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