STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0313PFAM: cyclase family protein; KEGG: plu:plu1439 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Xcel_0315
KEGG: pol:Bpro_4735 putative indolepyruvate oxidoreductase subunit B.
 
     0.902
Xcel_0314
Indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: pol:Bpro_4734 thiamine pyrophosphate enzyme- like TPP-binding.
 
     0.899
Xcel_0312
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1936 AraC family transcriptional regulator.
 
     0.779
Xcel_2231
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: ppf:Pput_2591 XRE family transcriptional regulator.
  
    0.707
Xcel_0310
PFAM: Luciferase-like monooxygenase; KEGG: azo:azo1944 hypothetical protein.
 
     0.568
Xcel_2675
PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK5068 multidrug resistance protein; permease.
   
    0.557
Xcel_3341
PFAM: major facilitator superfamily MFS_1; KEGG: mfa:Mfla_0523 EmrB/QacA family drug resistance transporter.
   
    0.557
Xcel_0309
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: bha:BH0194 repressor in the phenylacetic acid catabolic pathway.
  
     0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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