STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0322PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_0869 major facilitator transporter. (422 aa)    
Predicted Functional Partners:
Xcel_0321
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rlt:Rleg2_2358 transcriptional regulator, ArsR family.
 
     0.949
Xcel_0320
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ppu:PP_1721 HAD superfamily hydrolase.
       0.552
Xcel_0762
Hypothetical protein; KEGG: bcj:BCAL0196 major facilitator superfamily protein.
  
     0.546
Xcel_0952
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: hch:HCH_01127 ABC-type oligopeptide transport system, periplasmic component.
  
    0.540
Xcel_0323
KEGG: asa:ASA_2910 flp pilus assembly protein FlpE.
       0.524
Xcel_0324
PFAM: type II secretion system protein E; KEGG: bbr:BB2098 secretory protein.
       0.524
Xcel_0325
KEGG: ank:AnaeK_3451 hypothetical protein.
       0.524
Xcel_0326
PFAM: type II secretion system protein; KEGG: mno:Mnod_2571 type II secretion system protein.
       0.524
Xcel_0059
PFAM: amino acid permease-associated region; KEGG: pde:Pden_4334 amino acid permease-associated region.
  
     0.434
Xcel_1430
PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.