STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0324PFAM: type II secretion system protein E; KEGG: bbr:BB2098 secretory protein. (383 aa)    
Predicted Functional Partners:
Xcel_0325
KEGG: ank:AnaeK_3451 hypothetical protein.
  
  
 0.891
Xcel_0326
PFAM: type II secretion system protein; KEGG: mno:Mnod_2571 type II secretion system protein.
  
  
 0.891
Xcel_0323
KEGG: asa:ASA_2910 flp pilus assembly protein FlpE.
  
  
 0.863
Xcel_1031
PFAM: type II secretion system protein; KEGG: rsq:Rsph17025_0300 type II secretion system protein.
 
  
 0.846
Xcel_0327
Hypothetical protein.
     
 0.733
Xcel_0329
KEGG: acp:A2cp1_1867 GAF sensor signal transduction histidine kinase.
     
 0.646
Xcel_0328
KEGG: sal:Sala_1101 TadE-like protein.
       0.625
Xcel_1032
PFAM: type II secretion system protein; KEGG: bav:BAV2284 pilus assembly protein.
  
 0.581
Xcel_0321
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rlt:Rleg2_2358 transcriptional regulator, ArsR family.
       0.524
Xcel_0322
PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_0869 major facilitator transporter.
       0.524
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.