STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0339PFAM: protein of unknown function DUF664. (190 aa)    
Predicted Functional Partners:
Xcel_0140
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1852 hypothetical protein.
 
     0.728
Xcel_3298
Hypothetical protein.
  
   
 0.653
Xcel_0229
Hypothetical protein.
  
     0.586
Xcel_0340
KEGG: hypothetical protein.
       0.525
Xcel_0321
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rlt:Rleg2_2358 transcriptional regulator, ArsR family.
  
     0.504
Xcel_2721
KEGG: ade:Adeh_3797 hypothetical protein.
  
     0.491
Xcel_3284
KEGG: rlt:Rleg2_1526 hypothetical protein.
 
     0.481
Xcel_1116
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rle:RL3033 hypothetical protein.
 
     0.436
Xcel_3277
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.426
Xcel_3287
Putative transmembrane anti-sigma factor; KEGG: GK23348 gene product from transcript GK23348- RA.
  
     0.425
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.