STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0353PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mlo:mlr4723 hypothetical protein. (135 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
    0.738
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
    0.695
Xcel_1445
PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase.
  
     0.607
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.523
Xcel_0355
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit.
       0.523
Xcel_1266
PFAM: protein of unknown function DUF75.
   
    0.513
Xcel_1480
PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein.
   
    0.513
Xcel_1724
KEGG: mes:Meso_3385 hypothetical protein.
  
     0.472
Xcel_0192
PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein.
 
  
 0.454
Xcel_0111
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll2156 hypothetical protein.
  
     0.424
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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