STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0359KEGG: abo:ABO_1591 alpha/beta fold family hydrolase. (186 aa)    
Predicted Functional Partners:
Xcel_3105
PFAM: glycosyl transferase group 1; KEGG: mrd:Mrad2831_4619 glycosyl transferase group 1.
    
 0.768
Xcel_1453
KEGG: rsq:Rsph17025_0585 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
  
    0.711
Xcel_2519
PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_4679 hypothetical protein.
   
    0.609
Xcel_2206
Hypothetical protein.
      0.590
Xcel_0360
PFAM: pentapeptide repeat protein; KEGG: bca:BCE_1946 hypothetical protein.
       0.559
Xcel_1674
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: afw:Anae109_4038 ATP-dependent DNA ligase.
 
     0.499
Xcel_1878
KEGG: sme:SMa0044 hypothetical protein.
 
     0.456
Xcel_0484
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: ade:Adeh_3063 VCBS.
  
     0.434
Xcel_0427
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sse:Ssed_4139 putative outer membrane adhesin like proteiin.
  
     0.429
Xcel_0488
PFAM: RDD domain containing protein; Forkhead- associated protein; KEGG: predicted gene, 100042292.
  
     0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.