STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0367PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein. (332 aa)    
Predicted Functional Partners:
Xcel_0368
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase).
 
  0.991
Xcel_0369
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
 
 
  0.980
Xcel_1189
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1912 transmembrane lipoprotein.
 
  0.964
Xcel_2661
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase).
 
  0.964
Xcel_2786
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease).
 
  0.964
Xcel_2662
KEGG: bha:BH0482 lipoprotein.
 
 
  0.955
Xcel_2784
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
 
 
  0.920
Xcel_1188
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
 
  0.856
Xcel_0370
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
 
     0.685
Xcel_2663
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
 
     0.514
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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