STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0370Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase. (509 aa)    
Predicted Functional Partners:
Xcel_0114
PFAM: glycoside hydrolase family 39; KEGG: cja:CJA_3008 beta-xylosidase, putative, xyl39A.
  
  
 
0.919
Xcel_2663
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
  
  
 
0.900
Xcel_0369
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
 
     0.864
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
Xcel_2650
PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase.
     
  0.800
Xcel_0371
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: bha:BH1061 alpha-glucuronidase.
 
     0.768
Xcel_2662
KEGG: bha:BH0482 lipoprotein.
 
     0.731
Xcel_2684
KEGG: sus:Acid_4394 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate- binding CenC domain protein; Carbohydrate-binding family 9; Carbohydrate-binding family V/XII; SMART: glycoside hydrolase family 10; Carbohydrate- binding family V/XII.
  
  
 0.719
Xcel_0368
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase).
 
     0.706
Xcel_0367
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
     0.685
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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