STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0378PFAM: PfkB domain protein; KEGG: bvi:Bcep1808_1562 ribokinase. (301 aa)    
Predicted Functional Partners:
hisA
Bifunctional HisA/TrpF protein; KEGG: plu:plu0797 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein.
  
  
 0.631
Xcel_0379
PFAM: transcriptional regulator PadR family protein; KEGG: scl:sce6005 transcriptional regulator.
 
     0.592
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
 
    0.552
Xcel_0377
PFAM: aldo/keto reductase; KEGG: xac:XAC3199 oxidoreductase.
       0.547
Xcel_0376
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; Luciferase-like monooxygenase; KEGG: pol:Bpro_1407 FAD linked oxidase-like.
   
 
 0.510
Xcel_2405
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: apa:APP7_1068 alcohol dehydrogenase / acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.495
Xcel_0380
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1439 lipoprotein releasing system, ATP-binding protein.
       0.483
Xcel_2617
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dal:Dalk_3943 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.477
Xcel_0373
PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_1523 glycosyltransferase.
 
    0.460
Xcel_1430
PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator.
  
     0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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