STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0379PFAM: transcriptional regulator PadR family protein; KEGG: scl:sce6005 transcriptional regulator. (177 aa)    
Predicted Functional Partners:
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
 
   
 0.947
Xcel_0380
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1439 lipoprotein releasing system, ATP-binding protein.
 
     0.840
Xcel_0382
KEGG: hypothetical protein.
       0.620
Xcel_0378
PFAM: PfkB domain protein; KEGG: bvi:Bcep1808_1562 ribokinase.
 
     0.592
Xcel_2674
Hypothetical protein; KEGG: shn:Shewana3_1270 major facilitator transporter.
 
    0.495
Xcel_0699
PFAM: protein of unknown function DUF214; KEGG: acp:A2cp1_1921 protein of unknown function DUF214.
 
     0.448
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.