STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (503 aa)    
Predicted Functional Partners:
Xcel_0402
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4- epimerase.
 
 0.996
Xcel_2782
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
 
 
 0.903
Xcel_0412
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase.
 
 
 0.891
Xcel_0401
PFAM: carbohydrate kinase FGGY; KEGG: asu:Asuc_0493 carbohydrate kinase FGGY.
 
  
 0.888
Xcel_0114
PFAM: glycoside hydrolase family 39; KEGG: cja:CJA_3008 beta-xylosidase, putative, xyl39A.
     
  0.800
Xcel_0370
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
     
  0.800
Xcel_2663
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
     
  0.800
Xcel_2827
KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.727
Xcel_0404
KEGG: ret:RHE_CH03165 xylose ABC transporter, substrate-binding protein.
 
     0.593
Xcel_2828
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase.
  
  
 0.566
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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