STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0412Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase. (504 aa)    
Predicted Functional Partners:
Xcel_2782
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
  
  
 
0.927
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.891
Xcel_2650
PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase.
     
 0.821
Xcel_0407
PFAM: protein of unknown function DUF1680; KEGG: hypothetical protein; K09955 hypothetical protein.
 
   
 0.791
Xcel_0411
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0905 L-arabinose transport system (sugar-binding protein).
 
    0.789
Xcel_0413
KEGG: bha:BH3492 GntR family transcriptional regulator.
       0.584
Xcel_0414
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3493 ABC transporter ATP-binding protein.
       0.584
Xcel_0415
KEGG: bpt:Bpet0035 hypothetical protein.
       0.584
Xcel_1726
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.564
Xcel_0409
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU28740 integral membrane protein.
  
    0.472
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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