STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0413KEGG: bha:BH3492 GntR family transcriptional regulator. (120 aa)    
Predicted Functional Partners:
Xcel_0414
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3493 ABC transporter ATP-binding protein.
 
    0.956
Xcel_3322
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3493 ABC transporter ATP-binding protein.
 
    0.813
Xcel_0415
KEGG: bpt:Bpet0035 hypothetical protein.
       0.797
Xcel_0417
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbp:Sbal223_2832 ABC transporter related.
  
    0.601
Xcel_0412
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase.
       0.584
Xcel_0416
PFAM: regulatory protein TetR; KEGG: mlo:mlr3851 TetR family transcriptional regulator.
  
    0.541
Xcel_0418
PFAM: ABC-2 type transporter; KEGG: bcb:BCB4264_A2507 putative ABC transporter, permease protein.
       0.539
Xcel_0411
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0905 L-arabinose transport system (sugar-binding protein).
       0.403
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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