STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Xcel_0429H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: azo:azo3092 putative potassium uptake protein, membrane component. (461 aa)    
Predicted Functional Partners:
Xcel_0428
PFAM: TrkA-N domain protein; KEGG: pol:Bpro_0214 TrkA-N.
 
 0.985
Xcel_1918
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: mca:MCA2849 potassium transporter peripheral membrane component.
  
 
 0.834
Xcel_1917
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cja:CJA_3579 trk system potassium uptake protein TrkA.
  
 
 0.823
Xcel_0430
PFAM: histone deacetylase superfamily; KEGG: bsu:BSU29710 acetoin dehydrogenase.
   
   0.667
Xcel_1723
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.566
Xcel_3187
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: tcx:Tcr_0063 putative monovalent cation/H+ antiporter subunit A.
     
 0.472
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
  
 0.401
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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