STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0430PFAM: histone deacetylase superfamily; KEGG: bsu:BSU29710 acetoin dehydrogenase. (390 aa)    
Predicted Functional Partners:
Xcel_0068
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xcc:XCC3278 flavin monoamine oxidase-related protein.
   
 0.913
Xcel_1943
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
   
 0.887
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
    
 
 0.791
Xcel_1932
PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_1024 acetyl coenzyme A synthetase (ADP forming), alpha domain protein.
 
     0.725
Xcel_0285
Non-specific serine/threonine protein kinase; KEGG: mxa:MXAN_5351 SNF2/helicase domain protein; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.712
Xcel_0683
KEGG: mucin-associated surface protein (MASP).
    
 0.712
Xcel_2324
PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bps:BPSL0763 putative helicase SNF2 family protein.
    
 0.712
Xcel_2335
PFAM: helicase domain protein; KEGG: bxe:Bxe_A0849 hypothetical protein.
    
 0.712
Xcel_2863
PFAM: Ankyrin; SMART: Ankyrin; KEGG: sfu:Sfum_1848 ankyrin.
   
 0.691
Xcel_0429
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: azo:azo3092 putative potassium uptake protein, membrane component.
   
   0.667
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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