STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0460PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family. (236 aa)    
Predicted Functional Partners:
Xcel_0462
KEGG: hypothetical protein.
 
     0.861
Xcel_0461
Hypothetical protein.
 
     0.840
Xcel_2031
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: scl:sce0787 hypothetical protein.
  
    0.593
Xcel_1350
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: bac:BamMC406_5609 transcriptional regulator.
  
  
 0.538
Xcel_0416
PFAM: regulatory protein TetR; KEGG: mlo:mlr3851 TetR family transcriptional regulator.
  
     0.493
Xcel_2675
PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK5068 multidrug resistance protein; permease.
  
    0.480
Xcel_0227
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
  
  
 0.461
Xcel_2710
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family.
  
     0.440
Xcel_1187
PFAM: protein of unknown function DUF624; KEGG: hypothetical protein.
  
     0.422
Xcel_3020
KEGG: hypothetical protein.
  
     0.411
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.