STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0462KEGG: hypothetical protein. (467 aa)    
Predicted Functional Partners:
Xcel_0461
Hypothetical protein.
 
     0.953
Xcel_0460
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family.
 
     0.861
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
  
     0.613
Xcel_3123
KEGG: bbt:BBta_3059 hypothetical protein.
  
     0.593
Xcel_2924
Hypothetical protein.
  
     0.592
Xcel_0463
KEGG: mpo:Mpop_2092 hypothetical protein.
       0.574
Xcel_1187
PFAM: protein of unknown function DUF624; KEGG: hypothetical protein.
  
     0.565
Xcel_3226
KEGG: dac:Daci_3662 Ig family protein.
  
     0.564
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.555
Xcel_1350
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: bac:BamMC406_5609 transcriptional regulator.
  
     0.546
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.