STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0488PFAM: RDD domain containing protein; Forkhead- associated protein; KEGG: predicted gene, 100042292. (511 aa)    
Predicted Functional Partners:
Xcel_0484
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: ade:Adeh_3063 VCBS.
 
   0.946
Xcel_0486
PFAM: protein of unknown function DUF58; KEGG: sus:Acid_7892 hypothetical protein.
 
     0.945
Xcel_0487
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: cti:RALTA_B0173 putative protease, transglutaminase motif.
 
     0.945
Xcel_0492
Hypothetical protein.
 
    0.934
Xcel_0491
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_0871 putative serine/threonine protein kinase.
 
     0.901
Xcel_0490
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: Hypothetical protein CBG02561.
 
   
0.883
Xcel_0493
PFAM: cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; AAA ATPase; KEGG: bcb:BCB4264_A2089 FtsK/SpoIIIE family protein.
 
  
 0.878
Xcel_0427
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sse:Ssed_4139 putative outer membrane adhesin like proteiin.
 
   0.822
Xcel_0485
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bce:BC2117 MoxR protein.
 
     0.804
Xcel_0489
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: rme:Rmet_2562 protein serine/threonine phosphatases.
       0.773
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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