STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0577PFAM: DnaB domain protein helicase domain protein; KEGG: mmw:Mmwyl1_3461 replicative DNA helicase. (421 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
 0.929
Xcel_3350
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
 
  
0.916
Xcel_0578
KEGG: aav:Aave_1758 hypothetical protein.
  
  
 0.871
Xcel_0590
TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: cjd:JJD26997_0851 putative prophage LambdaCh01, recombination protein Bet.
 
     0.820
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 
 0.818
Xcel_0588
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: gme:Gmet_0362 single-strand binding protein.
  
 
 0.793
Xcel_0579
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hne:HNE_3394 HNH endonuclease domain- containing protein.
  
    0.791
Xcel_0580
Hypothetical protein.
       0.773
Xcel_2579
PFAM: Integrase catalytic region; KEGG: mxa:MXAN_3613 transposase, IS21 family.
  
 
 0.766
Xcel_2580
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mms:mma_2801 transposase.
  
 
 0.766
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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