STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0599KEGG: ade:Adeh_4038 MaoC-like dehydratase; Belongs to the UPF0336 family. (153 aa)    
Predicted Functional Partners:
Xcel_0600
PFAM: MaoC domain protein dehydratase; KEGG: mxa:MXAN_4672 MaoC domain protein.
 
 0.999
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: bcy:Bcer98_3067 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.752
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.704
Xcel_2134
Putative transcriptional regulator, PucR family; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator.
  
     0.633
Xcel_1480
PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein.
  
     0.587
Xcel_0702
KEGG: mxa:MXAN_7409 hypothetical protein.
  
     0.578
Xcel_2135
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: sml:Smlt1028 putative malonyl CoA-acyl carrier protein transacylase.
  
   
 0.574
Xcel_0070
TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: vco:VC0395_A2428 sec-independent translocase.
  
     0.520
Xcel_1095
PFAM: thioesterase superfamily protein; KEGG: xcb:XC_3095 hypothetical protein.
 
   
 0.501
Xcel_2284
Hypothetical protein; KEGG: xca:xccb100_3359 DNA polymerase III tau and gamma subunits.
  
     0.492
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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