STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0615Hypothetical protein. (166 aa)    
Predicted Functional Partners:
Xcel_0614
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: met:M446_5053 ECF subfamily RNA polymerase sigma-24 factor.
 
     0.953
Xcel_0616
KEGG: hypothetical protein.
 
     0.950
Xcel_0617
PFAM: Tetratricopeptide TPR_4; KEGG: scl:sce6745 hypothetical protein.
 
     0.919
Xcel_0205
Hypothetical protein.
  
     0.647
Xcel_1117
KEGG: eli:ELI_11625 hypothetical protein.
  
     0.613
Xcel_0945
PFAM: pentapeptide repeat protein; KEGG: scl:sce2720 hypothetical protein.
  
     0.541
Xcel_2602
Hypothetical protein.
  
     0.527
Xcel_1430
PFAM: regulatory protein TetR; KEGG: scl:sce5643 TetR family transcriptional regulator.
  
     0.523
Xcel_0200
PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: rce:RC1_3671 cold shock-like protein CspA.
  
     0.522
Xcel_1785
KEGG: Os11g0544100; hypothetical protein.
  
     0.519
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.