STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0671PFAM: glutathione peroxidase; KEGG: kpe:KPK_2151 vitamin B12 transport periplasmic protein BtuE; Belongs to the glutathione peroxidase family. (164 aa)    
Predicted Functional Partners:
Xcel_1704
KEGG: cak:Caul_4167 hypothetical protein.
    
 0.818
Xcel_0673
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.591
Xcel_0672
PFAM: pseudouridine synthase; KEGG: vei:Veis_2605 pseudouridine synthase.
       0.564
Xcel_0674
PFAM: protein of unknown function UPF0079; KEGG: swi:Swit_2676 hypothetical protein.
       0.564
Xcel_3368
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: zmo:ZMO1142 thioredoxin reductase.
  
  
 0.541
Xcel_0785
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mpo:Mpop_3475 glutaredoxin 3.
  
 
 0.500
Xcel_2439
TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein.
  
 
 0.497
Xcel_2949
TIGRFAM: trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
  
 0.494
Xcel_2230
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_2206 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.477
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
 0.458
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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