STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0704PFAM: OmpA/MotB domain protein; KEGG: oan:Oant_0490 OmpA/MotB domain protein. (217 aa)    
Predicted Functional Partners:
Xcel_2658
KEGG: sus:Acid_0267 hypothetical protein.
  
 
 0.896
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.687
Xcel_0213
KEGG: sus:Acid_1228 hypothetical protein.
  
 
   0.641
Xcel_0703
KEGG: rsq:Rsph17025_3141 hypothetical protein.
       0.628
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.600
Xcel_0040
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpo:Mpop_4845 endonuclease/exonuclease/phosphatase.
   
  
 0.589
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 
 0.570
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.563
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
 0.560
Xcel_0702
KEGG: mxa:MXAN_7409 hypothetical protein.
 
   
 0.546
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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